Database sources:
ENCODE project
GEO Datasets
GeneHancer
ReMap 2018
ReMap 2022
For the cell type specific database, we have determined probable cell type specific regulatory regions using the 'Activity-by-contact model' and ENCODE datasets for H3K27Ac marks, DNAse-seq and gene expression.
Cite our work:
TFEA.ChIP: a tool kit for transcription factor binding site enrichment analysis capitalizing on ChIP-seq datasets, Laura Puente-Santamaria, Wyeth W Wasserman, Luis del Peso, Bioinformatics, Volume 35, Issue 24, 15 December 2019, Pages 5339–5340
(DOI)
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Select a tab delimited file containing two columns: gene identifiers and the sorting parameter -such as log( Fold Change) or p-value-
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